Variant report

Variant	rs9920938
Chromosome Location	chr15:56472624-56472625
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56454940..56456888-chr15:56470980..56473182,2	MCF-7	breast:
2	chr15:56468018..56469682-chr15:56471943..56474273,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12101968	0.96[ASN][1000 genomes]
rs13329272	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13379617	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13380064	0.91[ASN][1000 genomes]
rs2682018	0.91[ASN][1000 genomes]
rs28404413	0.91[ASN][1000 genomes]
rs28583563	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28594302	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28637684	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28808273	0.91[ASN][1000 genomes]
rs9920255	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56453000-56479600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:56453600-56515000	Weak transcription	NHLF	lung
3	chr15:56454400-56473400	Weak transcription	K562	blood
4	chr15:56454600-56484000	Weak transcription	Brain Anterior Caudate	brain
5	chr15:56456600-56484800	Weak transcription	Aorta	Aorta
6	chr15:56457400-56500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:56458000-56474000	Weak transcription	Pancreas	Pancrea
8	chr15:56458400-56496200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
10	chr15:56459400-56484400	Weak transcription	Spleen	Spleen
11	chr15:56459600-56473200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr15:56460200-56480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:56461400-56482400	Weak transcription	Ovary	ovary
14	chr15:56463600-56496600	Weak transcription	NHEK	skin
15	chr15:56464000-56484000	Weak transcription	Fetal Kidney	kidney
16	chr15:56464400-56479600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:56464600-56497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:56465000-56486200	Weak transcription	Osteobl	bone
19	chr15:56465400-56496600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:56465600-56481000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:56465800-56473200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:56465800-56496000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:56465800-56496600	Weak transcription	HMEC	breast
24	chr15:56466000-56476600	Weak transcription	Liver	Liver
25	chr15:56466000-56476800	Weak transcription	Primary B cells from cord blood	blood
26	chr15:56466000-56479600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:56466000-56482400	Weak transcription	NH-A	brain
28	chr15:56466000-56484600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr15:56466000-56497000	Weak transcription	HSMMtube	muscle
30	chr15:56466000-56500000	Weak transcription	Thymus	Thymus
31	chr15:56466000-56514200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr15:56466200-56476800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr15:56466200-56478200	Weak transcription	Primary T cells from cord blood	blood
34	chr15:56466200-56481200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:56466200-56483800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:56466200-56494800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:56466400-56495400	Weak transcription	Fetal Stomach	stomach
38	chr15:56466800-56476600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:56466800-56479600	Weak transcription	Left Ventricle	heart
40	chr15:56466800-56484800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:56466800-56494600	Weak transcription	Fetal Intestine Large	intestine
42	chr15:56467000-56500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr15:56467000-56511600	Weak transcription	Fetal Intestine Small	intestine
44	chr15:56469000-56484400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:56469400-56478000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:56469600-56477600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr15:56469600-56477800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:56469600-56491400	Weak transcription	A549	lung
49	chr15:56470000-56478000	Weak transcription	HepG2	liver
50	chr15:56470200-56476000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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