Variant report

Variant	rs13380184
Chromosome Location	chr15:73354052-73354053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73085797..73088021-chr15:73353697..73355855,2	MCF-7	breast:
2	chr15:73340283..73347207-chr15:73351084..73357651,9	MCF-7	breast:
3	chr15:73352462..73355061-chr15:73359053..73360956,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12324461	1.00[AFR][1000 genomes]
rs13379876	1.00[AFR][1000 genomes]
rs13380051	1.00[AFR][1000 genomes]
rs13380398	1.00[AFR][1000 genomes]
rs28623014	1.00[AFR][1000 genomes]
rs34500003	0.87[AFR][1000 genomes]
rs9972372	1.00[AFR][1000 genomes]
rs9972555	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73346400-73355000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73346400-73355400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:73347000-73358800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:73347200-73354400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:73347600-73354200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:73348200-73355600	Weak transcription	Fetal Lung	lung
7	chr15:73348600-73355000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:73349200-73355000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:73349200-73355000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:73349400-73354400	Weak transcription	Brain Anterior Caudate	brain
11	chr15:73349400-73367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:73351000-73355000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:73352000-73365000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr15:73353200-73354400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr15:73353400-73354200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:73353400-73354400	Enhancers	Duodenum Mucosa	Duodenum
17	chr15:73353400-73354600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:73353400-73356800	Enhancers	Brain Hippocampus Middle	brain
19	chr15:73353600-73354600	Enhancers	Psoas Muscle	Psoas
20	chr15:73353600-73356400	Enhancers	Brain Angular Gyrus	brain
21	chr15:73353800-73363400	Weak transcription	Aorta	Aorta
22	chr15:73353800-73366000	Weak transcription	Fetal Intestine Large	intestine
23	chr15:73353800-73367400	Weak transcription	Fetal Intestine Small	intestine
24	chr15:73354000-73355000	Weak transcription	Brain Substantia Nigra	brain
25	chr15:73354000-73359000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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