Variant report

Variant	rs9972372
Chromosome Location	chr15:73371204-73371205
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73304946..73307703-chr15:73371180..73373676,2	MCF-7	breast:
2	chr15:73356525..73360663-chr15:73369090..73372368,3	MCF-7	breast:
3	chr15:73075161..73076721-chr15:73370865..73372957,2	K562	blood:
4	chr15:73343238..73345497-chr15:73369477..73372153,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159322	Chromatin interaction
ENSG00000067141	Chromatin interaction
ENSG00000260898	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12324461	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13379876	1.00[AFR][1000 genomes]
rs13380051	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13380184	1.00[AFR][1000 genomes]
rs13380398	1.00[AFR][1000 genomes]
rs16957727	1.00[YRI][hapmap]
rs28623014	1.00[AFR][1000 genomes]
rs34500003	0.87[AFR][1000 genomes]
rs9972555	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73361000-73372400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:73365000-73374000	Enhancers	Brain Angular Gyrus	brain
3	chr15:73367000-73371800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:73368200-73375600	Enhancers	Brain Substantia Nigra	brain
5	chr15:73368200-73381000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:73368400-73373200	Enhancers	Brain Anterior Caudate	brain
7	chr15:73368600-73375200	Weak transcription	Aorta	Aorta
8	chr15:73368800-73371800	Enhancers	Rectal Smooth Muscle	rectum
9	chr15:73369200-73374600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr15:73369600-73374200	Enhancers	Brain Hippocampus Middle	brain
11	chr15:73369600-73374400	Enhancers	Brain Cingulate Gyrus	brain
12	chr15:73370000-73371600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr15:73370000-73371800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr15:73370000-73372200	Enhancers	Duodenum Mucosa	Duodenum
15	chr15:73370000-73373800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr15:73370200-73371600	Enhancers	Small Intestine	intestine
17	chr15:73370200-73371800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:73370200-73371800	Enhancers	Colon Smooth Muscle	Colon
19	chr15:73370200-73372000	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr15:73370200-73375600	Enhancers	Stomach Mucosa	stomach
21	chr15:73370400-73371600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:73370400-73371600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr15:73370400-73371600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr15:73370600-73371600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr15:73370600-73371600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr15:73370600-73371600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr15:73370600-73371600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:73370600-73371600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr15:73370600-73371600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr15:73370600-73371600	Enhancers	HepG2	liver
31	chr15:73370600-73373800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr15:73370800-73371400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:73370800-73371400	Enhancers	A549	lung
34	chr15:73370800-73371600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:73370800-73371600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:73370800-73371600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr15:73370800-73371600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:73370800-73371600	Enhancers	HMEC	breast
39	chr15:73370800-73371600	Enhancers	NHEK	skin
40	chr15:73370800-73371800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr15:73370800-73371800	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr15:73370800-73371800	Enhancers	Hela-S3	cervix
43	chr15:73370800-73371800	Enhancers	NH-A	brain
44	chr15:73370800-73372200	Enhancers	Fetal Intestine Small	intestine
45	chr15:73370800-73372400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:73370800-73372600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:73370800-73372600	Enhancers	Fetal Lung	lung
48	chr15:73371000-73371600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:73371000-73371600	Enhancers	Fetal Intestine Large	intestine
50	chr15:73371000-73371800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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