Variant report

Variant	rs13380349
Chromosome Location	chr15:53096381-53096382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53088202..53091601-chr15:53093551..53096557,3	MCF-7	breast:
2	chr15:53078999..53085478-chr15:53088216..53096885,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169856	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12324430	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324437	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16965206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440361	1.00[EUR][1000 genomes]
rs2440362	1.00[EUR][1000 genomes]
rs2456542	1.00[EUR][1000 genomes]
rs74012803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74014132	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1046970	chr15:53065114-53142386	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
4	nsv569428	chr15:53069874-53140045	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53095400-53096600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
2	chr15:53095400-53096600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
3	chr15:53095600-53096400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:53095600-53096400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:53095600-53096600	Enhancers	Lung	lung
6	chr15:53095600-53096800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr15:53095600-53096800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
8	chr15:53095600-53097000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr15:53095600-53097200	Bivalent Enhancer	Fetal Heart	heart
10	chr15:53095600-53097400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:53095600-53097800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr15:53095600-53098600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
13	chr15:53095600-53098800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
14	chr15:53095800-53096400	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:53095800-53096400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
16	chr15:53095800-53096400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:53095800-53096600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
18	chr15:53095800-53096800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
19	chr15:53095800-53096800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:53095800-53096800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:53095800-53096800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr15:53095800-53096800	Bivalent Enhancer	Adipose Nuclei	Adipose
23	chr15:53095800-53096800	Bivalent Enhancer	Brain Hippocampus Middle	brain
24	chr15:53095800-53096800	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr15:53095800-53096800	Bivalent Enhancer	Ovary	ovary
26	chr15:53095800-53097000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:53095800-53097000	Bivalent Enhancer	Fetal Stomach	stomach
28	chr15:53095800-53097000	Bivalent/Poised TSS	Thymus	Thymus
29	chr15:53095800-53097200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
30	chr15:53095800-53097200	Bivalent Enhancer	Fetal Intestine Large	intestine
31	chr15:53095800-53097200	Bivalent Enhancer	Fetal Thymus	thymus
32	chr15:53095800-53097200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
33	chr15:53095800-53097400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
34	chr15:53095800-53097400	Bivalent Enhancer	Left Ventricle	heart
35	chr15:53095800-53097800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr15:53095800-53097800	Active TSS	Pancreas	Pancrea
37	chr15:53095800-53097800	Bivalent/Poised TSS	Psoas Muscle	Psoas
38	chr15:53095800-53098400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
39	chr15:53095800-53098800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr15:53096000-53096400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
41	chr15:53096000-53096400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:53096000-53096400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
43	chr15:53096000-53096400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr15:53096000-53096400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:53096000-53096400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:53096000-53096400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:53096000-53096400	Bivalent Enhancer	Stomach Mucosa	stomach
48	chr15:53096000-53096400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
49	chr15:53096000-53096400	Bivalent/Poised TSS	HepG2	liver
50	chr15:53096000-53096600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood

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