Variant report

Variant	rs74012803
Chromosome Location	chr15:53149904-53149905
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53139577..53141179-chr15:53147410..53150139,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12324430	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12324437	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16965169	1.00[AMR][1000 genomes]
rs16965202	1.00[AMR][1000 genomes]
rs16965206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16965211	1.00[AMR][1000 genomes]
rs16965217	1.00[AMR][1000 genomes]
rs2440361	1.00[EUR][1000 genomes]
rs2440362	1.00[EUR][1000 genomes]
rs2456542	1.00[EUR][1000 genomes]
rs55783918	1.00[AMR][1000 genomes]
rs56230546	1.00[AMR][1000 genomes]
rs57668133	1.00[AMR][1000 genomes]
rs61403306	1.00[AMR][1000 genomes]
rs61407694	1.00[AMR][1000 genomes]
rs7166818	1.00[AMR][1000 genomes]
rs74012805	1.00[AMR][1000 genomes]
rs74014108	1.00[AMR][1000 genomes]
rs74014117	1.00[AMR][1000 genomes]
rs74014120	1.00[AMR][1000 genomes]
rs74014122	1.00[AMR][1000 genomes]
rs74014124	1.00[AMR][1000 genomes]
rs74014125	1.00[AMR][1000 genomes]
rs74014126	1.00[AMR][1000 genomes]
rs74014128	1.00[AMR][1000 genomes]
rs74014129	1.00[AMR][1000 genomes]
rs74014132	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53148400-53151400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:53148600-53151000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:53148800-53150000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr15:53148800-53150600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:53148800-53150600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr15:53148800-53151000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:53149200-53151400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:53149400-53150600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr15:53149600-53150200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr15:53149600-53150200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr15:53149600-53150200	Enhancers	NH-A	brain
12	chr15:53149600-53150800	Flanking Active TSS	NHEK	skin
13	chr15:53149600-53151200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:53149600-53151600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:53149800-53150000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr15:53149800-53150000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
17	chr15:53149800-53150000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr15:53149800-53150000	Enhancers	A549	lung
19	chr15:53149800-53150200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr15:53149800-53150200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:53149800-53150200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
22	chr15:53149800-53150600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr15:53149800-53150600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:53149800-53150800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr15:53149800-53150800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:53149800-53151400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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