Variant report
| Variant | rs74014117 |
|---|---|
| Chromosome Location | chr15:53099711-53099712 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:53098934..53100673-chr15:53103575..53106101,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs16965169 | 1.00[AMR][1000 genomes] |
| rs16965202 | 1.00[AMR][1000 genomes] |
| rs16965211 | 1.00[AMR][1000 genomes] |
| rs16965217 | 1.00[AMR][1000 genomes] |
| rs55783918 | 1.00[AMR][1000 genomes] |
| rs56230546 | 1.00[AMR][1000 genomes] |
| rs57668133 | 1.00[AMR][1000 genomes] |
| rs61403306 | 1.00[AMR][1000 genomes] |
| rs61407694 | 1.00[AMR][1000 genomes] |
| rs7166818 | 1.00[AMR][1000 genomes] |
| rs74012803 | 1.00[AMR][1000 genomes] |
| rs74012805 | 1.00[AMR][1000 genomes] |
| rs74014108 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74014120 | 1.00[AMR][1000 genomes] |
| rs74014122 | 1.00[AMR][1000 genomes] |
| rs74014124 | 1.00[AMR][1000 genomes] |
| rs74014125 | 1.00[AMR][1000 genomes] |
| rs74014126 | 1.00[AMR][1000 genomes] |
| rs74014128 | 1.00[AMR][1000 genomes] |
| rs74014129 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv471245 | chr15:52607262-53187165 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 52 gene(s) | inside rSNPs | diseases |
| 2 | nsv1041421 | chr15:52661342-53148286 | Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046970 | chr15:53065114-53142386 | Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | n/a |
| 4 | nsv569428 | chr15:53069874-53140045 | Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:53099400-53100600 | Enhancers | Liver | Liver |
