Variant report

Variant	rs74014125
Chromosome Location	chr15:53115631-53115632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53079651..53082730-chr15:53114348..53117214,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169856	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16965169	1.00[AMR][1000 genomes]
rs16965202	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16965211	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16965217	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55783918	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56230546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56317034	0.93[AFR][1000 genomes]
rs57668133	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61403306	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61407694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7166818	1.00[AMR][1000 genomes]
rs74012803	1.00[AMR][1000 genomes]
rs74012805	1.00[AMR][1000 genomes]
rs74014108	1.00[AMR][1000 genomes]
rs74014117	1.00[AMR][1000 genomes]
rs74014120	1.00[AMR][1000 genomes]
rs74014122	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014128	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014129	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1046970	chr15:53065114-53142386	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
4	nsv569428	chr15:53069874-53140045	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a
5	nsv1538	chr15:53110785-53148080	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv1038129	chr15:53111512-53142386	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv275198	chr15:53114710-53123005	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53100600-53116600	Weak transcription	Liver	Liver
2	chr15:53114000-53116400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:53115000-53116600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links