Variant report

Variant	rs16965169
Chromosome Location	chr15:53075099-53075100
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53072465..53075963-chr15:53080706..53083147,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169856	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16965202	1.00[AMR][1000 genomes]
rs16965211	1.00[AMR][1000 genomes]
rs16965217	1.00[AMR][1000 genomes]
rs55783918	1.00[AMR][1000 genomes]
rs56230546	1.00[AMR][1000 genomes]
rs57668133	1.00[AMR][1000 genomes]
rs61403306	1.00[AMR][1000 genomes]
rs61407694	1.00[AMR][1000 genomes]
rs7166818	1.00[AMR][1000 genomes]
rs74012803	1.00[AMR][1000 genomes]
rs74012805	1.00[AMR][1000 genomes]
rs74014108	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74014117	1.00[AMR][1000 genomes]
rs74014120	1.00[AMR][1000 genomes]
rs74014122	1.00[AMR][1000 genomes]
rs74014124	1.00[AMR][1000 genomes]
rs74014125	1.00[AMR][1000 genomes]
rs74014126	1.00[AMR][1000 genomes]
rs74014128	1.00[AMR][1000 genomes]
rs74014129	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv457142	chr15:53041887-53091896	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv569427	chr15:53041887-53091896	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	nsv1046970	chr15:53065114-53142386	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
6	nsv569428	chr15:53069874-53140045	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53071000-53075400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:53073400-53075200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:53073400-53075400	Weak transcription	Pancreas	Pancrea
4	chr15:53073600-53075200	Enhancers	Liver	Liver
5	chr15:53073800-53075400	Weak transcription	HepG2	liver
6	chr15:53075000-53075200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr15:53075000-53075400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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