Variant report

Variant	rs13381902
Chromosome Location	chr18:9794542-9794543
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9706796..9708354-chr18:9793800..9795789,2	K562	blood:

Variant related genes	Relation type
ENSG00000168461	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12455141	0.84[AMR][1000 genomes]
rs2267567	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2267571	0.82[AMR][1000 genomes]
rs3786425	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6650630	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs731440	0.82[EUR][1000 genomes]
rs733568	0.81[EUR][1000 genomes]
rs733569	0.81[EUR][1000 genomes]
rs733570	0.80[EUR][1000 genomes]
rs8094513	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9949761	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv909366	chr18:9760942-9827368	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv833586	chr18:9783830-9971693	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9771800-9796000	Weak transcription	HUVEC	blood vessel
2	chr18:9771800-9803800	Weak transcription	Fetal Stomach	stomach
3	chr18:9771800-9807800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr18:9772000-9797400	Weak transcription	Colon Smooth Muscle	Colon
5	chr18:9772200-9797000	Weak transcription	Fetal Muscle Leg	muscle
6	chr18:9773200-9797200	Weak transcription	Brain Anterior Caudate	brain
7	chr18:9773600-9807000	Weak transcription	Lung	lung
8	chr18:9775400-9797000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr18:9775600-9806400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr18:9780200-9807000	Weak transcription	Pancreas	Pancrea
11	chr18:9782400-9802600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr18:9782400-9802600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr18:9782400-9803400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr18:9783200-9802600	Weak transcription	NHLF	lung
15	chr18:9783200-9804000	Weak transcription	NHEK	skin
16	chr18:9783400-9797400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr18:9783400-9802600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr18:9783400-9808600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr18:9785400-9800000	Weak transcription	Spleen	Spleen
20	chr18:9785800-9802400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr18:9787800-9796600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:9787800-9797000	Weak transcription	HSMM	muscle
23	chr18:9787800-9797200	Weak transcription	NHDF-Ad	bronchial
24	chr18:9787800-9797400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr18:9788000-9797000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr18:9788000-9802800	Weak transcription	NH-A	brain
27	chr18:9788200-9797200	Weak transcription	HSMMtube	muscle
28	chr18:9788800-9797200	Weak transcription	Fetal Lung	lung
29	chr18:9790600-9797000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr18:9790600-9797400	Weak transcription	Ovary	ovary
31	chr18:9790800-9797000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr18:9791200-9797000	Weak transcription	A549	lung
33	chr18:9791200-9798000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr18:9791400-9796000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr18:9791600-9802600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr18:9791800-9794600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr18:9792000-9794800	Strong transcription	Hela-S3	cervix
38	chr18:9792200-9798600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr18:9792600-9794600	Strong transcription	Osteobl	bone
40	chr18:9792600-9795000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr18:9792600-9802600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr18:9792800-9796400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr18:9792800-9802400	Weak transcription	Aorta	Aorta
44	chr18:9792800-9807000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr18:9793000-9795200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr18:9793200-9797000	Weak transcription	K562	blood
47	chr18:9793200-9802400	Weak transcription	Placenta	Placenta
48	chr18:9793200-9803800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr18:9793800-9794600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr18:9793800-9795200	Weak transcription	Monocytes-CD14+_RO01746	blood

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