Variant report

Variant	rs733570
Chromosome Location	chr18:9804697-9804698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:9802514..9805093-chr18:9840296..9841826,2	K562	blood:
2	chr18:9704929..9711093-chr18:9801644..9805263,5	K562	blood:
3	chr18:9803187..9805652-chr18:9928374..9931029,2	K562	blood:
4	chr18:9802480..9806529-chr18:9879304..9883173,3	K562	blood:
5	chr18:9803876..9804698-chr18:9814238..9815024,3	MCF-7	breast:
6	chr18:9803832..9806273-chr18:9946710..9949491,2	K562	blood:
7	chr18:9802880..9805666-chr18:9934392..9937556,3	K562	blood:
8	chr18:9802052..9805093-chr18:9840296..9843352,4	K562	blood:
9	chr18:9796353..9798423-chr18:9802735..9804992,2	MCF-7	breast:
10	chr18:9800652..9805908-chr18:9908377..9915779,12	K562	blood:
11	chr18:9779531..9781885-chr18:9803846..9806144,2	K562	blood:
12	chr18:9757328..9758357-chr18:9804207..9804764,3	MCF-7	breast:
13	chr18:9743405..9745081-chr18:9803596..9805288,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000101558	Chromatin interaction
ENSG00000265564	Chromatin interaction
ENSG00000272799	Chromatin interaction
ENSG00000168461	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1029868	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs12455141	0.89[CHB][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13381902	0.80[EUR][1000 genomes]
rs2109616	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs2267567	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2267571	0.82[CHB][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3786425	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4280317	0.84[EUR][1000 genomes]
rs6650630	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67812325	0.81[EUR][1000 genomes]
rs731440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs733568	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs733569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8094513	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9949761	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv909366	chr18:9760942-9827368	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
6	nsv833586	chr18:9783830-9971693	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9771800-9807800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr18:9773600-9807000	Weak transcription	Lung	lung
3	chr18:9775600-9806400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr18:9780200-9807000	Weak transcription	Pancreas	Pancrea
5	chr18:9783400-9808600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr18:9792800-9807000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:9801600-9805200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr18:9801800-9804800	Enhancers	Brain Angular Gyrus	brain
9	chr18:9801800-9804800	Enhancers	Brain Hippocampus Middle	brain
10	chr18:9802000-9805000	Enhancers	Brain Substantia Nigra	brain
11	chr18:9802200-9804800	Enhancers	Brain Cingulate Gyrus	brain
12	chr18:9802400-9804800	Enhancers	Aorta	Aorta
13	chr18:9802400-9804800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr18:9802400-9804800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr18:9802400-9805000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr18:9802400-9805000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr18:9802400-9805000	Enhancers	Placenta	Placenta
18	chr18:9802400-9805000	Enhancers	Spleen	Spleen
19	chr18:9802600-9804800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr18:9802600-9804800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr18:9802600-9804800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr18:9802600-9804800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr18:9802600-9804800	Enhancers	Fetal Muscle Trunk	muscle
24	chr18:9802600-9804800	Enhancers	Ovary	ovary
25	chr18:9802600-9805000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr18:9802600-9805000	Enhancers	Adipose Nuclei	Adipose
27	chr18:9802600-9805600	Enhancers	Fetal Muscle Leg	muscle
28	chr18:9802800-9804800	Enhancers	HSMM	muscle
29	chr18:9803000-9804800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr18:9803000-9805000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr18:9803200-9804800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr18:9803400-9805000	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr18:9803600-9804800	Enhancers	Brain Germinal Matrix	brain
34	chr18:9803600-9804800	Enhancers	HSMMtube	muscle
35	chr18:9803600-9808200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr18:9803800-9804800	Enhancers	Fetal Lung	lung
37	chr18:9803800-9805000	Enhancers	Fetal Brain Male	brain
38	chr18:9804000-9804800	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr18:9804000-9804800	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr18:9804000-9805000	Genic enhancers	Primary monocytes fromperipheralblood	blood
41	chr18:9804000-9805000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr18:9804000-9805000	Enhancers	Esophagus	oesophagus
43	chr18:9804000-9805000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr18:9804200-9804800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr18:9804200-9804800	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr18:9804200-9805000	Flanking Active TSS	HepG2	liver
47	chr18:9804200-9805200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr18:9804200-9805400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr18:9804200-9805800	Strong transcription	Hela-S3	cervix
50	chr18:9804200-9806800	Strong transcription	Primary B cells from peripheral blood	blood

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