Variant report

Variant	rs1338208
Chromosome Location	chr1:66997733-66997734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:66996735-67003737	IMR90	lung:	n/a	n/a
2	CHD1	chr1:66997255-67003973	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
SGIP1	TF binding region

rs_ID	r²[population]
rs17129052	0.82[YRI][hapmap]
rs17129322	0.83[LWK][hapmap]
rs17129384	0.83[LWK][hapmap]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66988400-66998200	Weak transcription	Osteobl	bone
2	chr1:66991800-66998600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:66993600-66998200	Weak transcription	NHEK	skin
4	chr1:66993800-66998000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:66994000-66998000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:66996200-66998000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:66996200-66998200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:66996600-66997800	Enhancers	Primary B cells from cord blood	blood
9	chr1:66996800-66998000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:66997000-66998000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:66997200-66998200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:66997200-66998200	Enhancers	HUVEC	blood vessel
13	chr1:66997400-66998200	Enhancers	NHDF-Ad	bronchial
14	chr1:66997400-66998400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:66997400-66998400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:66997400-66998400	Enhancers	Brain Substantia Nigra	brain
17	chr1:66997400-66998400	Weak transcription	Left Ventricle	heart
18	chr1:66997600-66997800	Flanking Active TSS	NHLF	lung
19	chr1:66997600-66998000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:66997600-66998000	Weak transcription	Fetal Kidney	kidney
21	chr1:66997600-66998200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:66997600-66998400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:66997600-66998600	Enhancers	Fetal Heart	heart

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