Variant report

Variant	rs17129052
Chromosome Location	chr1:67000765-67000766
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1338208	0.82[YRI][hapmap]
rs17129057	1.00[AFR][1000 genomes]
rs17129058	1.00[AFR][1000 genomes]

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66998200-67001000	Active TSS	Fetal Brain Female	brain
2	chr1:66998400-67001800	Active TSS	Brain Anterior Caudate	brain
3	chr1:66998400-67001800	Active TSS	Brain Cingulate Gyrus	brain
4	chr1:66998400-67002000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:66998400-67003200	Active TSS	Aorta	Aorta
6	chr1:66998600-67002000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr1:66998600-67002400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:66998800-67001200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:66998800-67001200	Active TSS	Fetal Heart	heart
10	chr1:66998800-67001400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
11	chr1:66998800-67001600	Active TSS	Brain Substantia Nigra	brain
12	chr1:66998800-67001800	Active TSS	Brain Hippocampus Middle	brain
13	chr1:66998800-67002000	Active TSS	Osteobl	bone
14	chr1:66998800-67002200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:66998800-67002200	Active TSS	Brain Angular Gyrus	brain
16	chr1:66998800-67002200	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr1:66998800-67002200	Active TSS	Fetal Brain Male	brain
18	chr1:66998800-67002600	Active TSS	NHDF-Ad	bronchial
19	chr1:66998800-67002800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:66998800-67003400	Active TSS	NHLF	lung
21	chr1:66999000-67000800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:66999000-67001200	Active TSS	Right Atrium	heart
23	chr1:66999000-67001200	Active TSS	Right Ventricle	heart
24	chr1:66999000-67001600	Active TSS	Brain Germinal Matrix	brain
25	chr1:66999000-67001800	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr1:66999000-67002600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:66999000-67003600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:67000000-67001000	Enhancers	HepG2	liver
29	chr1:67000000-67004800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:67000000-67005000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr1:67000000-67005400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr1:67000200-67000800	Active TSS	Muscle Satellite Cultured Cells	--
33	chr1:67000200-67000800	Active TSS	NH-A	brain
34	chr1:67000200-67001000	Active TSS	Left Ventricle	heart
35	chr1:67000200-67001600	Active TSS	Stomach Smooth Muscle	stomach
36	chr1:67000200-67001800	Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr1:67000200-67006400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr1:67000400-67000800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr1:67000400-67000800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:67000400-67000800	Weak transcription	Fetal Kidney	kidney
41	chr1:67000400-67000800	Active TSS	HUVEC	blood vessel
42	chr1:67000400-67001000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr1:67000400-67001400	Enhancers	Fetal Lung	lung
44	chr1:67000400-67002000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr1:67000400-67003000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:67000400-67005000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr1:67000400-67005200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr1:67000400-67008000	Weak transcription	Lung	lung
49	chr1:67000400-67022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:67000600-67000800	Flanking Active TSS	Primary hematopoietic stem cells	blood

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