Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:20312607..20315159-chr2:20320979..20324527,5	MCF-7	breast:
2	chr2:20320341..20322786-chr2:20329123..20332598,3	MCF-7	breast:
3	chr2:20320713..20323668-chr2:20422749..20426302,3	MCF-7	breast:
4	chr2:20320788..20324422-chr2:20327103..20331085,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115884	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10193851	0.82[CHB][hapmap]
rs10205345	0.82[CHB][hapmap]
rs11900871	0.82[EUR][1000 genomes]
rs11903770	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs13389730	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs13394115	1.00[MEX][hapmap]
rs13398487	0.82[CHB][hapmap]
rs13408734	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13414082	0.82[CHB][hapmap]
rs13415910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13423586	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13424750	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13424960	0.81[ASN][1000 genomes]
rs13429364	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13430170	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16987383	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16987387	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs28623398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59086150	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73223882	0.82[EUR][1000 genomes]
rs73225754	0.82[EUR][1000 genomes]
rs7586565	0.82[CHB][hapmap]
rs7587797	1.00[MEX][hapmap]
rs9306889	1.00[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009521	chr2:20310479-20388959	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20308000-20322200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:20314200-20322200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:20320400-20322600	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:20320400-20326400	Enhancers	Placenta	Placenta
5	chr2:20320600-20322200	Enhancers	Stomach Mucosa	stomach
6	chr2:20320600-20322600	Enhancers	Liver	Liver
7	chr2:20321000-20322400	Bivalent Enhancer	HepG2	liver
8	chr2:20321200-20322600	Weak transcription	Pancreas	Pancrea
9	chr2:20321600-20322200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:20321800-20322200	Enhancers	A549	lung
11	chr2:20322000-20322200	Weak transcription	Fetal Intestine Large	intestine
12	chr2:20322000-20323000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr2:20322000-20323400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:20322000-20323400	Enhancers	Esophagus	oesophagus
15	chr2:20322000-20327600	Weak transcription	Fetal Intestine Small	intestine

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