Variant report

Variant	rs16987383
Chromosome Location	chr2:20324562-20324563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10193851	0.82[CHB][hapmap]
rs10205345	0.82[CHB][hapmap]
rs11900871	1.00[CEU][hapmap]
rs11903770	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs13384258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13389730	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[YRI][hapmap]
rs13398487	0.82[CHB][hapmap]
rs13408734	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13414082	0.82[CHB][hapmap]
rs13415910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13423586	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13424750	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13429364	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13430170	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16987387	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs28623398	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59086150	0.81[EUR][1000 genomes]
rs7586565	0.82[CHB][hapmap]
rs9306889	1.00[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009521	chr2:20310479-20388959	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:20320400-20326400	Enhancers	Placenta	Placenta
2	chr2:20322000-20327600	Weak transcription	Fetal Intestine Small	intestine
3	chr2:20322200-20325000	Weak transcription	Stomach Mucosa	stomach
4	chr2:20322600-20324800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:20322600-20327600	Weak transcription	Liver	Liver
6	chr2:20323000-20324600	Weak transcription	Pancreas	Pancrea
7	chr2:20323000-20324800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:20323000-20324800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:20323000-20325000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:20323000-20329800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:20323200-20324800	Weak transcription	NHEK	skin
12	chr2:20323200-20325000	Weak transcription	Lung	lung
13	chr2:20323400-20324600	Weak transcription	Esophagus	oesophagus
14	chr2:20323400-20324800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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