Variant report

Variant	rs13385521
Chromosome Location	chr2:172070991-172070992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10174587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10203412	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13387136	1.00[EUR][1000 genomes]
rs13387227	1.00[EUR][1000 genomes]
rs13408729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3770426	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172067600-172071200	Enhancers	K562	blood
2	chr2:172067800-172071000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:172067800-172073400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:172069400-172071000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:172069400-172071400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:172069400-172073200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:172070600-172072000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:172070800-172071400	Enhancers	NHEK	skin
9	chr2:172070800-172071600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:172070800-172071800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:172070800-172072000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:172070800-172072000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr2:172070800-172072000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:172070800-172072000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:172070800-172072000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr2:172070800-172072000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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