Variant report

Variant	rs13408729
Chromosome Location	chr2:172065358-172065359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10174587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203412	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13384675	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13385521	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13387136	1.00[EUR][1000 genomes]
rs13387227	1.00[EUR][1000 genomes]
rs218312	0.81[ASN][1000 genomes]
rs218315	0.83[ASN][1000 genomes]
rs3770426	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv979348	chr2:172057884-172068984	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172054600-172066200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:172064400-172065400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:172064800-172067400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:172065000-172065600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:172065000-172065600	Enhancers	Primary hematopoietic stem cells	blood
6	chr2:172065000-172065800	Enhancers	Dnd41	blood
7	chr2:172065000-172067200	Enhancers	K562	blood
8	chr2:172065200-172065400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr2:172065200-172065400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:172065200-172065400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr2:172065200-172065600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:172065200-172065600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:172065200-172065600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:172065200-172065600	Enhancers	Primary B cells from cord blood	blood
15	chr2:172065200-172065800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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