Variant report

Variant	rs13386665
Chromosome Location	chr2:187442105-187442106
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:187396369..187398023-chr2:187440810..187442748,2	MCF-7	breast:
2	chr2:187410468..187412799-chr2:187439579..187442121,2	MCF-7	breast:
3	chr2:187437479..187442784-chr2:187443924..187447436,6	MCF-7	breast:
4	chr2:187438759..187442258-chr2:187444014..187446139,4	MCF-7	breast:
5	chr2:187406067..187412442-chr2:187438004..187442761,8	MCF-7	breast:
6	chr2:187416465..187418037-chr2:187440678..187443102,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10153708	0.83[AMR][1000 genomes]
rs10191572	0.83[AMR][1000 genomes]
rs10191888	0.83[AMR][1000 genomes]
rs10196722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10202802	0.83[AMR][1000 genomes]
rs13396060	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13403385	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13405296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13410314	0.83[AMR][1000 genomes]
rs13419307	0.83[AMR][1000 genomes]
rs16828044	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16828048	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16828049	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56316122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56385600	0.83[AMR][1000 genomes]
rs59828675	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6746367	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6758885	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044325	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044336	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73044342	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73979316	0.83[AMR][1000 genomes]
rs73981329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73981332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73981336	0.83[AMR][1000 genomes]
rs9973427	0.98[AFR][1000 genomes]
rs9973506	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9973742	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004309	chr2:187389880-187455946	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536082	chr2:187389880-187455946	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv875552	chr2:187393729-187505486	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1014203	chr2:187413781-187477586	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv536083	chr2:187413781-187477586	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	esv2756507	chr2:187416494-187470494	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	esv2756956	chr2:187416599-187492742	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
10	nsv818105	chr2:187423298-187481835	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	esv2753217	chr2:187424494-187470494	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
12	nsv10208	chr2:187436719-187443357	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187435600-187453800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:187438600-187448600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:187439200-187442400	Enhancers	NH-A	brain
4	chr2:187439400-187442200	Enhancers	Osteobl	bone
5	chr2:187439400-187442800	Enhancers	HUVEC	blood vessel
6	chr2:187440800-187443000	Enhancers	A549	lung
7	chr2:187440800-187443800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:187441400-187453400	Weak transcription	NHEK	skin
9	chr2:187441600-187442400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:187441600-187445800	Weak transcription	Aorta	Aorta
11	chr2:187441800-187453600	Weak transcription	Brain Substantia Nigra	brain
12	chr2:187442000-187443800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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