Variant report

Variant	rs13419307
Chromosome Location	chr2:187453353-187453354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:187350070..187352270-chr2:187452591..187455868,3	MCF-7	breast:
2	chr2:187350028..187353171-chr2:187452977..187457092,6	MCF-7	breast:
3	chr2:187350319..187353074-chr2:187452754..187457832,8	K562	blood:
4	chr2:187451176..187453820-chr2:187556844..187559816,2	K562	blood:

Variant related genes	Relation type
ENSG00000144369	Chromatin interaction
ENSG00000065548	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10153708	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191572	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191888	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10196722	0.83[AMR][1000 genomes]
rs10202802	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13386665	0.83[AMR][1000 genomes]
rs13396060	0.83[AMR][1000 genomes]
rs13403385	0.83[AMR][1000 genomes]
rs13405296	0.83[AMR][1000 genomes]
rs13410314	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16828044	0.83[AMR][1000 genomes]
rs16828048	0.83[AMR][1000 genomes]
rs16828049	0.83[AMR][1000 genomes]
rs56316122	0.83[AMR][1000 genomes]
rs56385600	1.00[AMR][1000 genomes]
rs59828675	0.83[AMR][1000 genomes]
rs6746367	0.83[AMR][1000 genomes]
rs6758885	0.83[AMR][1000 genomes]
rs73044325	0.83[AMR][1000 genomes]
rs73044336	0.83[AMR][1000 genomes]
rs73044342	0.83[AMR][1000 genomes]
rs73979316	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73981329	0.83[AMR][1000 genomes]
rs73981332	0.83[AMR][1000 genomes]
rs73981336	1.00[AMR][1000 genomes]
rs9973506	0.83[AMR][1000 genomes]
rs9973742	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004309	chr2:187389880-187455946	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536082	chr2:187389880-187455946	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv875552	chr2:187393729-187505486	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1014203	chr2:187413781-187477586	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv536083	chr2:187413781-187477586	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	esv2756507	chr2:187416494-187470494	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	esv2756956	chr2:187416599-187492742	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
10	nsv818105	chr2:187423298-187481835	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	esv2753217	chr2:187424494-187470494	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187435600-187453800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:187441400-187453400	Weak transcription	NHEK	skin
3	chr2:187441800-187453600	Weak transcription	Brain Substantia Nigra	brain
4	chr2:187442400-187453800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:187443000-187453400	Weak transcription	A549	lung
6	chr2:187445800-187454200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:187448400-187453400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:187450600-187453800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:187450600-187453800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:187450800-187453400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:187450800-187453600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr2:187450800-187453800	Weak transcription	Adipose Nuclei	Adipose
13	chr2:187450800-187453800	Weak transcription	Fetal Intestine Large	intestine
14	chr2:187450800-187453800	Weak transcription	Right Ventricle	heart
15	chr2:187451200-187453800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:187451400-187453400	Weak transcription	Fetal Intestine Small	intestine
17	chr2:187451800-187453400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:187451800-187453800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:187452000-187453400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:187452000-187453400	Weak transcription	HepG2	liver
21	chr2:187452000-187453800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:187452200-187453600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr2:187453000-187454000	Enhancers	Placenta	Placenta
24	chr2:187453200-187453400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:187453200-187453600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:187453200-187454000	Enhancers	Primary T killer memory cells from peripheral blood	blood

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