Variant report

Variant	rs13386783
Chromosome Location	chr2:234165706-234165707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:234163941..234166024-chr2:234172224..234174634,2	K562	blood:
2	chr2:234163205..234166188-chr2:234263952..234265730,2	MCF-7	breast:
3	chr2:234164837..234166394-chr2:234168045..234170363,2	MCF-7	breast:
4	chr2:234164721..234166387-chr2:234329039..234331585,2	K562	blood:
5	chr2:234161693..234166047-chr2:234167019..234170688,4	MCF-7	breast:
6	chr2:234160181..234161722-chr2:234164238..234166311,2	MCF-7	breast:
7	chr2:234161323..234164097-chr2:234164693..234167813,4	K562	blood:
8	chr2:234163227..234166174-chr2:234179109..234182042,2	MCF-7	breast:
9	chr2:234164498..234166264-chr2:234297088..234298835,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000085978	Chromatin interaction

rs_ID	r²[population]
rs13390554	0.83[AMR][1000 genomes]
rs13409759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13427255	0.85[AMR][1000 genomes]
rs57929619	0.85[AMR][1000 genomes]
rs60212745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73110050	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73112047	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73114277	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9973722	0.83[AMR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234161400-234166800	Weak transcription	Esophagus	oesophagus
2	chr2:234161400-234170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:234161400-234170600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:234161400-234170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:234161600-234167600	Weak transcription	Stomach Mucosa	stomach
6	chr2:234161800-234166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:234161800-234166200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:234161800-234169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr2:234161800-234171800	Weak transcription	Fetal Kidney	kidney
10	chr2:234161800-234180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr2:234162000-234165800	Weak transcription	Colonic Mucosa	Colon
12	chr2:234162200-234167000	Weak transcription	Lung	lung
13	chr2:234162200-234205200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:234162200-234205200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr2:234162400-234170000	Weak transcription	Fetal Brain Male	brain
16	chr2:234162400-234192000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr2:234162400-234196400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:234162400-234205200	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr2:234162400-234205400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:234162600-234176200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr2:234162600-234188600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr2:234162600-234192400	Strong transcription	Osteobl	bone
23	chr2:234162600-234205000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr2:234162600-234205200	Strong transcription	Fetal Muscle Leg	muscle
25	chr2:234162800-234166800	Weak transcription	Aorta	Aorta
26	chr2:234162800-234167000	Weak transcription	Right Ventricle	heart
27	chr2:234162800-234167800	Weak transcription	Brain Hippocampus Middle	brain
28	chr2:234162800-234170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr2:234162800-234194000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr2:234162800-234197000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:234162800-234205600	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr2:234163000-234165800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:234163000-234166200	Weak transcription	HSMMtube	muscle
34	chr2:234163000-234166800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr2:234163000-234167400	Weak transcription	Brain Substantia Nigra	brain
36	chr2:234163000-234170200	Strong transcription	Primary B cells from peripheral blood	blood
37	chr2:234163000-234170800	Weak transcription	Fetal Heart	heart
38	chr2:234163000-234175600	Strong transcription	Fetal Thymus	thymus
39	chr2:234163000-234176200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:234163000-234192200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr2:234163000-234192200	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr2:234163200-234166000	Weak transcription	Brain Anterior Caudate	brain
43	chr2:234163200-234166800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr2:234163200-234166800	Weak transcription	Brain Angular Gyrus	brain
45	chr2:234163200-234166800	Weak transcription	Small Intestine	intestine
46	chr2:234163200-234166800	Weak transcription	Spleen	Spleen
47	chr2:234163200-234167000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr2:234163200-234168000	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr2:234163200-234169000	Weak transcription	Pancreas	Pancrea
50	chr2:234163200-234169400	Weak transcription	NHLF	lung

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