Variant report

Variant	rs13386893
Chromosome Location	chr2:85877081-85877082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:85871951..85874298-chr2:85875762..85878640,2	MCF-7	breast:
2	chr2:85869158..85870679-chr2:85874969..85877858,2	K562	blood:

Variant related genes	Relation type
ENSG00000168883	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10209258	1.00[MEX][hapmap]
rs1370543	1.00[MEX][hapmap]
rs3024801	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs34737496	1.00[AMR][1000 genomes]
rs73943272	1.00[AMR][1000 genomes]
rs73943280	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874459	chr2:85828014-85939207	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv874460	chr2:85828014-85941074	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv874461	chr2:85853653-85939207	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv874462	chr2:85853653-85941074	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv874463	chr2:85853653-85946708	Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85844800-85881600	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:85845000-85879800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:85845000-85880000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:85845000-85880800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:85845000-85881400	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:85845000-85881800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr2:85845000-85883600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:85845400-85879800	Strong transcription	Lung	lung
9	chr2:85845400-85881000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:85845400-85881400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:85845400-85886400	Strong transcription	Fetal Muscle Leg	muscle
12	chr2:85845600-85881800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr2:85845600-85882200	Strong transcription	Fetal Muscle Trunk	muscle
14	chr2:85845800-85881400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:85845800-85881600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr2:85845800-85881800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:85846000-85880800	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:85846000-85881400	Strong transcription	Fetal Stomach	stomach
19	chr2:85846000-85881400	Strong transcription	Fetal Thymus	thymus
20	chr2:85846000-85887000	Strong transcription	Liver	Liver
21	chr2:85846000-85887400	Strong transcription	Fetal Intestine Small	intestine
22	chr2:85846200-85879400	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr2:85846200-85879400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:85846200-85880000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:85846200-85880000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:85846200-85880000	Strong transcription	Stomach Smooth Muscle	stomach
27	chr2:85846200-85880600	Strong transcription	H1 Cell Line	embryonic stem cell
28	chr2:85846200-85881200	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr2:85846200-85881400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr2:85846200-85881400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr2:85846200-85882000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr2:85846200-85889400	Strong transcription	Thymus	Thymus
33	chr2:85846400-85879600	Strong transcription	Fetal Intestine Large	intestine
34	chr2:85846400-85880600	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr2:85846800-85881400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr2:85846800-85881600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr2:85847600-85880000	Strong transcription	Fetal Lung	lung
38	chr2:85847800-85881400	Strong transcription	Dnd41	blood
39	chr2:85848000-85880200	Strong transcription	Brain Hippocampus Middle	brain
40	chr2:85849800-85880600	Strong transcription	Fetal Brain Female	brain
41	chr2:85855000-85877400	Strong transcription	K562	blood
42	chr2:85856200-85877400	Strong transcription	HepG2	liver
43	chr2:85856200-85881600	Strong transcription	Primary T cells from cord blood	blood
44	chr2:85856200-85882400	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr2:85857200-85880600	Strong transcription	Rectal Smooth Muscle	rectum
46	chr2:85857400-85877200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr2:85857400-85879400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr2:85857400-85880200	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr2:85857600-85877200	Strong transcription	Brain Substantia Nigra	brain
50	chr2:85857600-85878000	Strong transcription	NHEK	skin

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