Variant report

Variant	rs34737496
Chromosome Location	chr2:85896385-85896386
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:85889712..85892300-chr2:85895263..85898036,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168878	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13386893	1.00[AMR][1000 genomes]
rs73943272	1.00[AMR][1000 genomes]
rs73943280	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874459	chr2:85828014-85939207	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv874460	chr2:85828014-85941074	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv874461	chr2:85853653-85939207	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv874462	chr2:85853653-85941074	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv874463	chr2:85853653-85946708	Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv874464	chr2:85886175-85898898	Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85883600-85900000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:85884800-85896600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr2:85886400-85901000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:85887000-85905800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:85890200-85896400	Weak transcription	Pancreas	Pancrea
6	chr2:85891000-85905800	Weak transcription	Right Atrium	heart
7	chr2:85893000-85899200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:85893000-85903000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr2:85893200-85896600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr2:85894000-85905000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:85895000-85896400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:85895000-85896600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:85895400-85896400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:85895400-85896400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:85895400-85896400	Enhancers	NHDF-Ad	bronchial
16	chr2:85895400-85896600	Enhancers	Lung	lung
17	chr2:85895400-85897200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:85895600-85900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:85896000-85897200	Enhancers	GM12878-XiMat	blood
20	chr2:85896200-85901200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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