Variant report
| Variant | rs13387316 |
|---|---|
| Chromosome Location | chr2:86236895-86236896 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:86230802..86233704-chr2:86235020..86238319,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10153790 | 0.80[AFR][1000 genomes] |
| rs10171798 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10175597 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10179466 | 1.00[AMR][1000 genomes] |
| rs10184159 | 1.00[AMR][1000 genomes] |
| rs10193712 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12328075 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12617717 | 0.83[AFR][1000 genomes] |
| rs13393659 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13394650 | 1.00[AMR][1000 genomes] |
| rs13401184 | 1.00[AMR][1000 genomes] |
| rs13402568 | 1.00[AMR][1000 genomes] |
| rs13403007 | 1.00[AMR][1000 genomes] |
| rs13403541 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13404362 | 0.81[AFR][1000 genomes] |
| rs13413723 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13422309 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13430553 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17026886 | 1.00[AMR][1000 genomes] |
| rs17026975 | 1.00[AMR][1000 genomes] |
| rs2018608 | 0.83[AFR][1000 genomes] |
| rs2241435 | 0.83[AFR][1000 genomes] |
| rs2303339 | 0.83[AFR][1000 genomes] |
| rs2303340 | 0.83[AFR][1000 genomes] |
| rs28483806 | 1.00[AMR][1000 genomes] |
| rs28617344 | 1.00[AMR][1000 genomes] |
| rs28631015 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56104203 | 0.83[AFR][1000 genomes] |
| rs57020255 | 1.00[AMR][1000 genomes] |
| rs57062037 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57817729 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60768598 | 1.00[AMR][1000 genomes] |
| rs6748343 | 1.00[AMR][1000 genomes] |
| rs6755228 | 1.00[AMR][1000 genomes] |
| rs9309631 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001104 | chr2:86182021-86271923 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv535807 | chr2:86182021-86271923 | Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:86234200-86238800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr2:86235200-86238400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
