Variant report
| Variant | rs13387425 |
|---|---|
| Chromosome Location | chr2:190936486-190936487 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138381 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10201285 | 0.83[AMR][1000 genomes] |
| rs10205577 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10206643 | 0.83[AMR][1000 genomes] |
| rs13428131 | 1.00[MEX][hapmap] |
| rs16823986 | 0.84[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16832260 | 0.83[AMR][1000 genomes] |
| rs1805085 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59802059 | 0.83[AMR][1000 genomes] |
| rs9288169 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3439178 | chr2:190877215-191124499 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
