Variant report

Variant	rs16823986
Chromosome Location	chr2:190921589-190921590
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10201285	0.83[AMR][1000 genomes]
rs10205577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10206643	0.83[AMR][1000 genomes]
rs13387425	0.84[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13428131	0.87[ASW][hapmap];1.00[MEX][hapmap]
rs16832260	0.83[AMR][1000 genomes]
rs1805085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59802059	0.83[AMR][1000 genomes]
rs9288169	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190920200-190924600	Strong transcription	HSMM	muscle
2	chr2:190920600-190922200	Weak transcription	Fetal Muscle Leg	muscle
3	chr2:190920600-190924000	Weak transcription	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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