Variant report

Variant	rs13388025
Chromosome Location	chr2:234164164-234164165
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:234163941..234166024-chr2:234172224..234174634,2	K562	blood:
2	chr2:234163205..234166188-chr2:234263952..234265730,2	MCF-7	breast:
3	chr2:234161754..234164546-chr2:234176635..234178201,2	K562	blood:
4	chr2:234161693..234166047-chr2:234167019..234170688,4	MCF-7	breast:
5	chr2:234162476..234164619-chr2:234172094..234174882,2	MCF-7	breast:
6	chr2:234161285..234164496-chr2:234179412..234182858,4	MCF-7	breast:
7	chr2:234163227..234166174-chr2:234179109..234182042,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085978	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12471449	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12476635	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2119503	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58553066	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6758145	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758317	0.87[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234161400-234164400	Weak transcription	Placenta	Placenta
2	chr2:234161400-234165200	Weak transcription	Ovary	ovary
3	chr2:234161400-234166800	Weak transcription	Esophagus	oesophagus
4	chr2:234161400-234170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:234161400-234170600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:234161400-234170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr2:234161600-234165000	Enhancers	Colon Smooth Muscle	Colon
8	chr2:234161600-234167600	Weak transcription	Stomach Mucosa	stomach
9	chr2:234161800-234164200	Genic enhancers	Primary T cells fromperipheralblood	blood
10	chr2:234161800-234164200	Enhancers	HUVEC	blood vessel
11	chr2:234161800-234164400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:234161800-234164600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr2:234161800-234164600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr2:234161800-234166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:234161800-234166200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:234161800-234169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:234161800-234171800	Weak transcription	Fetal Kidney	kidney
18	chr2:234161800-234180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr2:234162000-234164200	Genic enhancers	Fetal Brain Female	brain
20	chr2:234162000-234164400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr2:234162000-234165000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
22	chr2:234162000-234165800	Weak transcription	Colonic Mucosa	Colon
23	chr2:234162200-234165000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:234162200-234165000	Weak transcription	Left Ventricle	heart
25	chr2:234162200-234167000	Weak transcription	Lung	lung
26	chr2:234162200-234205200	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr2:234162200-234205200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr2:234162400-234164200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:234162400-234170000	Weak transcription	Fetal Brain Male	brain
30	chr2:234162400-234192000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr2:234162400-234196400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr2:234162400-234205200	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr2:234162400-234205400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:234162600-234164400	Genic enhancers	Primary T cells from cord blood	blood
35	chr2:234162600-234164400	Weak transcription	Adipose Nuclei	Adipose
36	chr2:234162600-234164600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr2:234162600-234165000	Weak transcription	Primary B cells from cord blood	blood
38	chr2:234162600-234165000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr2:234162600-234176200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr2:234162600-234188600	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr2:234162600-234192400	Strong transcription	Osteobl	bone
42	chr2:234162600-234205000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr2:234162600-234205200	Strong transcription	Fetal Muscle Leg	muscle
44	chr2:234162800-234164200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr2:234162800-234164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr2:234162800-234164800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
47	chr2:234162800-234165400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr2:234162800-234166800	Weak transcription	Aorta	Aorta
49	chr2:234162800-234167000	Weak transcription	Right Ventricle	heart
50	chr2:234162800-234167800	Weak transcription	Brain Hippocampus Middle	brain

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