Variant report

Variant	rs6758145
Chromosome Location	chr2:234165157-234165158
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:234163941..234166024-chr2:234172224..234174634,2	K562	blood:
2	chr2:234163205..234166188-chr2:234263952..234265730,2	MCF-7	breast:
3	chr2:234164837..234166394-chr2:234168045..234170363,2	MCF-7	breast:
4	chr2:234164721..234166387-chr2:234329039..234331585,2	K562	blood:
5	chr2:234161693..234166047-chr2:234167019..234170688,4	MCF-7	breast:
6	chr2:234160181..234161722-chr2:234164238..234166311,2	MCF-7	breast:
7	chr2:234161323..234164097-chr2:234164693..234167813,4	K562	blood:
8	chr2:234163227..234166174-chr2:234179109..234182042,2	MCF-7	breast:
9	chr2:234164498..234166264-chr2:234297088..234298835,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000085978	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12471449	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12476635	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13388025	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119503	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58553066	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6758317	0.87[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234161400-234165200	Weak transcription	Ovary	ovary
2	chr2:234161400-234166800	Weak transcription	Esophagus	oesophagus
3	chr2:234161400-234170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:234161400-234170600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:234161400-234170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:234161600-234167600	Weak transcription	Stomach Mucosa	stomach
7	chr2:234161800-234166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:234161800-234166200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:234161800-234169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr2:234161800-234171800	Weak transcription	Fetal Kidney	kidney
11	chr2:234161800-234180600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:234162000-234165800	Weak transcription	Colonic Mucosa	Colon
13	chr2:234162200-234167000	Weak transcription	Lung	lung
14	chr2:234162200-234205200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr2:234162200-234205200	Strong transcription	Fetal Muscle Trunk	muscle
16	chr2:234162400-234170000	Weak transcription	Fetal Brain Male	brain
17	chr2:234162400-234192000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr2:234162400-234196400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:234162400-234205200	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr2:234162400-234205400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:234162600-234176200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr2:234162600-234188600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr2:234162600-234192400	Strong transcription	Osteobl	bone
24	chr2:234162600-234205000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr2:234162600-234205200	Strong transcription	Fetal Muscle Leg	muscle
26	chr2:234162800-234165400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr2:234162800-234166800	Weak transcription	Aorta	Aorta
28	chr2:234162800-234167000	Weak transcription	Right Ventricle	heart
29	chr2:234162800-234167800	Weak transcription	Brain Hippocampus Middle	brain
30	chr2:234162800-234170200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr2:234162800-234194000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr2:234162800-234197000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr2:234162800-234205600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr2:234163000-234165200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr2:234163000-234165400	Weak transcription	Gastric	stomach
36	chr2:234163000-234165800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr2:234163000-234166200	Weak transcription	HSMMtube	muscle
38	chr2:234163000-234166800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr2:234163000-234167400	Weak transcription	Brain Substantia Nigra	brain
40	chr2:234163000-234170200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr2:234163000-234170800	Weak transcription	Fetal Heart	heart
42	chr2:234163000-234175600	Strong transcription	Fetal Thymus	thymus
43	chr2:234163000-234176200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr2:234163000-234192200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr2:234163000-234192200	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr2:234163200-234165200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr2:234163200-234165400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr2:234163200-234165400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr2:234163200-234165400	Weak transcription	Fetal Stomach	stomach
50	chr2:234163200-234165400	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links