Variant report

Variant	rs13388257
Chromosome Location	chr2:172957534-172957535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12469319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13390848	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62183854	0.84[EUR][1000 genomes]
rs62183855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62183858	0.84[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172949800-172960800	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr2:172950400-172959000	Weak transcription	Hela-S3	cervix
3	chr2:172951800-172957600	Weak transcription	K562	blood
4	chr2:172953600-172957800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:172954400-172962600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
6	chr2:172954800-172957600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:172956000-172958000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:172956800-172957800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:172957400-172957600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr2:172957400-172958400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
11	chr2:172957400-172958800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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