Variant report

Variant	rs62183854
Chromosome Location	chr2:172955433-172955434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172815591..172817985-chr2:172954358..172957098,2	MCF-7	breast:
2	chr2:172900249..172901946-chr2:172954569..172956583,2	MCF-7	breast:
3	chr2:172894437..172897042-chr2:172954737..172956688,2	MCF-7	breast:
4	chr2:172955175..172957599-chr2:172976003..172977899,2	MCF-7	breast:

rs_ID	r²[population]
rs12469319	0.84[EUR][1000 genomes]
rs13388257	0.84[EUR][1000 genomes]
rs13390848	0.84[EUR][1000 genomes]
rs62183855	0.84[EUR][1000 genomes]
rs62183857	0.89[AMR][1000 genomes]
rs62183858	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172949800-172960800	Bivalent/Poised TSS	Fetal Brain Female	brain
2	chr2:172950400-172959000	Weak transcription	Hela-S3	cervix
3	chr2:172951400-172955600	Weak transcription	Dnd41	blood
4	chr2:172951800-172957600	Weak transcription	K562	blood
5	chr2:172953000-172956000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr2:172953600-172956400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:172953600-172957800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr2:172953800-172956200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:172954400-172956000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:172954400-172962600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
11	chr2:172954600-172955600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr2:172954600-172956200	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
13	chr2:172954600-172956600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:172954800-172955600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:172954800-172955600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr2:172954800-172955600	Bivalent Enhancer	Fetal Thymus	thymus
17	chr2:172954800-172956000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
18	chr2:172954800-172956000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:172954800-172956000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr2:172954800-172957600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:172955000-172955600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr2:172955200-172955600	Bivalent Enhancer	Spleen	Spleen
23	chr2:172955200-172955600	Flanking Bivalent TSS/Enh	HepG2	liver
24	chr2:172955200-172956000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
25	chr2:172955200-172956000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
26	chr2:172955400-172955600	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr2:172955400-172955600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:172955400-172955600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:172955400-172955600	Bivalent Enhancer	Left Ventricle	heart
30	chr2:172955400-172955600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
31	chr2:172955400-172955800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
32	chr2:172955400-172956000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
33	chr2:172955400-172956000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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