Variant report

Variant	rs13388614
Chromosome Location	chr2:179269903-179269904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10173900	1.00[AMR][1000 genomes]
rs10179074	1.00[AMR][1000 genomes]
rs10185798	1.00[AMR][1000 genomes]
rs13388666	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13392094	1.00[AMR][1000 genomes]
rs13407421	1.00[AMR][1000 genomes]
rs13411319	1.00[AMR][1000 genomes]
rs13418251	1.00[AMR][1000 genomes]
rs13427914	1.00[AMR][1000 genomes]
rs13431100	1.00[AMR][1000 genomes]
rs28371011	1.00[AMR][1000 genomes]
rs6705110	1.00[AMR][1000 genomes]
rs6723632	1.00[AMR][1000 genomes]
rs6734167	1.00[AMR][1000 genomes]
rs72650039	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv834467	chr2:179258140-179430965	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179268200-179270600	Enhancers	HSMM	muscle
2	chr2:179268400-179271000	Enhancers	HSMMtube	muscle
3	chr2:179269200-179270000	Enhancers	Fetal Muscle Trunk	muscle
4	chr2:179269200-179271800	Weak transcription	NHLF	lung
5	chr2:179269400-179271800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:179269400-179271800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:179269400-179277600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:179269600-179270000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:179269600-179270600	Weak transcription	K562	blood
10	chr2:179269600-179271000	Enhancers	GM12878-XiMat	blood
11	chr2:179269600-179271800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:179269600-179271800	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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