Variant report

Variant	rs13389200
Chromosome Location	chr2:141005742-141005743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10181846	0.92[YRI][hapmap]
rs10199683	0.84[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs13387305	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13403037	1.00[YRI][hapmap]
rs13407478	1.00[YRI][hapmap]
rs13409080	0.92[YRI][hapmap]
rs13428049	0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1388813	0.85[YRI][hapmap]
rs16843667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843685	1.00[YRI][hapmap]
rs16843701	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141003600-141005800	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr2:141004400-141005800	Active TSS	Psoas Muscle	Psoas
3	chr2:141004600-141005800	Enhancers	Adipose Nuclei	Adipose
4	chr2:141005400-141005800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:141005400-141005800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:141005400-141005800	Enhancers	Fetal Lung	lung
7	chr2:141005600-141006200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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