Variant report

Variant	rs13409080
Chromosome Location	chr2:141016151-141016152
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10169528	0.80[EUR][1000 genomes]
rs10181846	0.87[YRI][hapmap]
rs10199683	0.93[YRI][hapmap]
rs13387305	0.82[YRI][hapmap]
rs13389200	0.92[YRI][hapmap]
rs13403037	0.94[YRI][hapmap]
rs13407478	0.93[YRI][hapmap]
rs13428049	0.82[YRI][hapmap]
rs1388813	0.81[YRI][hapmap]
rs1552437	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16843615	0.86[EUR][1000 genomes]
rs16843673	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs16843685	1.00[YRI][hapmap]
rs16843705	0.93[EUR][1000 genomes]
rs16843873	0.86[EUR][1000 genomes]
rs16843902	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17385549	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17385570	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17385695	1.00[EUR][1000 genomes]
rs17385709	1.00[EUR][1000 genomes]
rs17385716	1.00[EUR][1000 genomes]
rs17385930	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17386226	1.00[CEU][hapmap]
rs17386351	1.00[CEU][hapmap]
rs17386365	0.86[EUR][1000 genomes]
rs17386834	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17387156	0.86[EUR][1000 genomes]
rs17477150	1.00[CEU][hapmap]
rs17477171	1.00[CEU][hapmap]
rs17477276	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17477437	1.00[CEU][hapmap]
rs17477611	0.86[EUR][1000 genomes]
rs17477639	0.86[EUR][1000 genomes]
rs17477758	0.86[EUR][1000 genomes]
rs17477890	0.86[EUR][1000 genomes]
rs17478002	0.86[EUR][1000 genomes]
rs2890519	1.00[CEU][hapmap]
rs7583997	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141015200-141016200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:141015200-141017000	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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