Variant report
| Variant | rs17385709 |
|---|---|
| Chromosome Location | chr2:141015819-141015820 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10169528 | 0.80[EUR][1000 genomes] |
| rs13409080 | 1.00[EUR][1000 genomes] |
| rs1552437 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs16843615 | 0.86[EUR][1000 genomes] |
| rs16843673 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16843705 | 0.89[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16843873 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs16843902 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17385549 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17385570 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17385695 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17385716 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17385930 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17386365 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17386834 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17387156 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17477276 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17477611 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17477639 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17477758 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17477890 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17478002 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7583997 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834392 | chr2:140920900-141086613 | Flanking Active TSS Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv431757 | chr2:140931289-141098020 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2754491 | chr2:140947477-141026986 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:141015200-141016200 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 2 | chr2:141015200-141017000 | Weak transcription | Adipose Nuclei | Adipose |
