Variant report

Variant	rs17477276
Chromosome Location	chr2:141079858-141079859
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13409080	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1552437	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843673	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16843705	0.80[EUR][1000 genomes]
rs16843873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843902	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17385549	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385570	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385695	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385709	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385716	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385930	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17386226	1.00[CEU][hapmap]
rs17386351	1.00[CEU][hapmap]
rs17386365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17386834	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17387156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17477150	1.00[CEU][hapmap]
rs17477171	1.00[CEU][hapmap]
rs17477437	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs17477611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17477639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17477758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17477890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17478002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2890519	1.00[CEU][hapmap]
rs7583997	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv1841939	chr2:141071674-141080797	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141077000-141080400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links