Variant report
| Variant | rs17477758 |
|---|---|
| Chromosome Location | chr2:141122507-141122508 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:141121172..141124109-chr2:141126429..141129083,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs13409080 | 0.86[EUR][1000 genomes] |
| rs1552437 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16843673 | 1.00[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs16843705 | 0.80[EUR][1000 genomes] |
| rs16843873 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16843902 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17385549 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17385570 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17385695 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17385709 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17385716 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17385930 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17386365 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17386834 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17387156 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17477276 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17477611 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17477639 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17477890 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17478002 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7583997 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754266 | chr2:141023643-141270786 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv875185 | chr2:141055080-141179257 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv1002168 | chr2:141056296-141157971 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv459496 | chr2:141111125-141151319 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv583189 | chr2:141111125-141151319 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:141118400-141124200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
