Variant report

Variant	rs16843873
Chromosome Location	chr2:141133249-141133250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13409080	0.86[EUR][1000 genomes]
rs1552437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843673	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16843705	0.80[EUR][1000 genomes]
rs16843902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17385549	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385570	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385695	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385709	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385716	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17385930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17386365	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17386834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17387156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17477276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17477611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17477639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17477758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17477890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17478002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7583997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv459507	chr2:141130097-141170340	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv583190	chr2:141130097-141170340	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141132400-141134200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr2:141132800-141133800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:141133200-141143200	Weak transcription	Brain Substantia Nigra	brain

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