Variant report

Variant	rs16843705
Chromosome Location	chr2:141016919-141016920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10166355	1.00[CHB][hapmap]
rs13409080	0.93[EUR][1000 genomes]
rs1486969	1.00[CHB][hapmap]
rs1492394	1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1552437	0.80[EUR][1000 genomes]
rs16843615	0.80[EUR][1000 genomes]
rs16843673	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843706	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs16843785	1.00[CHB][hapmap]
rs16843843	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs16843846	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs16843873	0.80[EUR][1000 genomes]
rs16843902	0.80[EUR][1000 genomes]
rs17385549	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17385570	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17385695	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17385709	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17385716	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17385930	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17386365	0.80[EUR][1000 genomes]
rs17386834	0.80[EUR][1000 genomes]
rs17387156	0.80[EUR][1000 genomes]
rs17477276	0.80[EUR][1000 genomes]
rs17477611	0.80[EUR][1000 genomes]
rs17477639	0.80[EUR][1000 genomes]
rs17477758	0.80[EUR][1000 genomes]
rs17477890	0.80[EUR][1000 genomes]
rs17478002	0.80[EUR][1000 genomes]
rs1968910	1.00[CHB][hapmap]
rs2046564	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs2931465	0.90[CHB][hapmap]
rs610276	1.00[CHB][hapmap]
rs657322	0.90[CHB][hapmap]
rs670617	1.00[CHB][hapmap]
rs7583997	0.80[EUR][1000 genomes]
rs7593072	0.80[CHB][hapmap]
rs7594736	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141015200-141017000	Weak transcription	Adipose Nuclei	Adipose

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