Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10166355	0.91[CHB][hapmap]
rs13398598	1.00[CEU][hapmap]
rs13414459	1.00[CEU][hapmap]
rs13414650	1.00[CEU][hapmap]
rs1486969	0.90[CHB][hapmap]
rs1492394	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16843496	1.00[EUR][1000 genomes]
rs16843508	1.00[EUR][1000 genomes]
rs16843512	1.00[EUR][1000 genomes]
rs16843516	1.00[EUR][1000 genomes]
rs16843705	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs16843706	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16843785	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap]
rs16843846	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844043	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs16844143	1.00[CEU][hapmap]
rs16844232	1.00[CEU][hapmap]
rs16844240	1.00[CEU][hapmap]
rs1968910	0.91[CHB][hapmap]
rs2046564	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs59834968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs610276	0.90[CHB][hapmap]
rs657322	0.80[CHB][hapmap]
rs670617	0.90[CHB][hapmap]
rs7562323	1.00[CEU][hapmap]
rs7594736	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141111400-141114600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:141112000-141114400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:141112200-141116600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:141112800-141114600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:141113200-141114600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:141113400-141114400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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