Variant report

Variant	rs7594736
Chromosome Location	chr2:141142609-141142610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10166355	0.91[CHB][hapmap]
rs10460268	0.81[YRI][hapmap]
rs13018061	0.82[YRI][hapmap]
rs1401116	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1474102	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs1486969	0.90[CHB][hapmap]
rs1492394	0.90[CHB][hapmap]
rs16843705	0.91[CHB][hapmap]
rs16843706	0.91[CHB][hapmap]
rs16843785	0.91[CHB][hapmap]
rs16843843	0.81[CHB][hapmap]
rs16843846	0.91[CHB][hapmap]
rs1968910	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs2046564	0.90[CHB][hapmap]
rs4954835	0.81[YRI][hapmap]
rs610276	0.90[CHB][hapmap]
rs649083	0.80[ASN][1000 genomes]
rs657322	0.80[CHB][hapmap]
rs670617	0.90[CHB][hapmap];0.80[ASN][1000 genomes]
rs684762	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7593072	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs7606534	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv459496	chr2:141111125-141151319	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583189	chr2:141111125-141151319	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv459507	chr2:141130097-141170340	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv583190	chr2:141130097-141170340	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv470488	chr2:141133405-141170339	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141133200-141143200	Weak transcription	Brain Substantia Nigra	brain
2	chr2:141142600-141142800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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