Variant report
| Variant | rs16843706 |
|---|---|
| Chromosome Location | chr2:141017162-141017163 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10166355 | 1.00[CHB][hapmap] |
| rs1486969 | 1.00[CHB][hapmap] |
| rs1492394 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs16843496 | 1.00[EUR][1000 genomes] |
| rs16843508 | 1.00[EUR][1000 genomes] |
| rs16843512 | 1.00[EUR][1000 genomes] |
| rs16843516 | 1.00[EUR][1000 genomes] |
| rs16843673 | 0.97[ASN][1000 genomes] |
| rs16843705 | 1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16843785 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs16843843 | 0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16843846 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1968910 | 1.00[CHB][hapmap] |
| rs2046564 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2931465 | 0.90[CHB][hapmap] |
| rs59834968 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs610276 | 1.00[CHB][hapmap] |
| rs657322 | 0.90[CHB][hapmap] |
| rs670617 | 1.00[CHB][hapmap] |
| rs7593072 | 0.80[CHB][hapmap] |
| rs7594736 | 0.91[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834392 | chr2:140920900-141086613 | Flanking Active TSS Weak transcription Enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv431757 | chr2:140931289-141098020 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2754491 | chr2:140947477-141026986 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:141017000-141017400 | Enhancers | Adipose Nuclei | Adipose |
