Variant report

Variant	rs657322
Chromosome Location	chr2:141074295-141074296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10166355	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10803583	0.87[EUR][1000 genomes]
rs11900092	0.84[EUR][1000 genomes]
rs1388808	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492394	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs1518439	0.87[EUR][1000 genomes]
rs1565638	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16843705	0.90[CHB][hapmap]
rs16843706	0.90[CHB][hapmap]
rs16843785	0.90[CHB][hapmap]
rs16843843	0.80[CHB][hapmap]
rs16843846	0.90[CHB][hapmap]
rs17477262	0.92[EUR][1000 genomes]
rs1968910	0.90[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2046564	1.00[CHB][hapmap]
rs2931465	0.89[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap]
rs59982045	0.82[EUR][1000 genomes]
rs610276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs649083	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs670617	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72892207	0.92[ASN][1000 genomes]
rs72892280	0.84[EUR][1000 genomes]
rs72892291	0.84[EUR][1000 genomes]
rs72894082	0.82[EUR][1000 genomes]
rs72894090	0.82[EUR][1000 genomes]
rs72896235	0.82[EUR][1000 genomes]
rs72896239	0.82[EUR][1000 genomes]
rs72896256	0.82[EUR][1000 genomes]
rs7594736	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv1841939	chr2:141071674-141080797	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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