Variant report

Variant	rs610276
Chromosome Location	chr2:141066669-141066670
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10166355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10803583	1.00[MEX][hapmap];0.91[TSI][hapmap]
rs1388808	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1486969	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1492394	1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[YRI][hapmap]
rs1565638	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16843705	1.00[CHB][hapmap]
rs16843706	1.00[CHB][hapmap]
rs16843785	1.00[CHB][hapmap]
rs16843843	0.90[CHB][hapmap]
rs16843846	1.00[CHB][hapmap]
rs17477262	0.84[EUR][1000 genomes]
rs1968910	1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2046564	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs2129483	1.00[MEX][hapmap];0.90[TSI][hapmap]
rs2931465	0.82[ASW][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.93[JPT][hapmap];0.84[TSI][hapmap];0.82[YRI][hapmap]
rs649083	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs657322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs670617	0.80[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72892207	0.89[ASN][1000 genomes]
rs72892280	0.92[EUR][1000 genomes]
rs72892291	0.92[EUR][1000 genomes]
rs7593072	0.90[CHB][hapmap]
rs7594736	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1002168	chr2:141056296-141157971	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141066000-141067200	Enhancers	Fetal Intestine Large	intestine
2	chr2:141066000-141067200	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links