Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10803583	1.00[MEX][hapmap];0.82[TSI][hapmap]
rs11897270	1.00[CHD][hapmap]
rs13003828	1.00[CHD][hapmap]
rs1471887	1.00[CEU][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1486969	1.00[MEX][hapmap];0.90[TSI][hapmap]
rs1492389	0.81[ASN][1000 genomes]
rs1518443	1.00[CHD][hapmap]
rs1518444	1.00[CHD][hapmap]
rs16843663	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16843745	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs17387292	1.00[CHD][hapmap]
rs17470100	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17476635	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17477262	0.90[ASN][1000 genomes]
rs1878741	1.00[CHD][hapmap]
rs610276	1.00[MEX][hapmap];0.90[TSI][hapmap]
rs670617	1.00[MEX][hapmap];0.82[TSI][hapmap]
rs72892280	0.95[ASN][1000 genomes]
rs72892291	0.95[ASN][1000 genomes]
rs7422845	1.00[CHD][hapmap]
rs901524	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875180	chr2:140735843-141004529	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv834392	chr2:140920900-141086613	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv431757	chr2:140931289-141098020	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv2754491	chr2:140947477-141026986	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141003400-141005400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:141003600-141005800	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr2:141004400-141004600	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr2:141004400-141005800	Active TSS	Psoas Muscle	Psoas

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