Variant report
| Variant | rs16843846 |
|---|---|
| Chromosome Location | chr2:141121130-141121131 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10166355 | 1.00[CHB][hapmap] |
| rs13398598 | 1.00[CEU][hapmap] |
| rs13414459 | 1.00[CEU][hapmap] |
| rs13414650 | 1.00[CEU][hapmap] |
| rs1486969 | 1.00[CHB][hapmap] |
| rs1492394 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs16843496 | 1.00[EUR][1000 genomes] |
| rs16843508 | 1.00[EUR][1000 genomes] |
| rs16843512 | 1.00[EUR][1000 genomes] |
| rs16843516 | 1.00[EUR][1000 genomes] |
| rs16843705 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs16843706 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs16843785 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs16843843 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844043 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes] |
| rs16844143 | 1.00[CEU][hapmap] |
| rs16844232 | 1.00[CEU][hapmap] |
| rs16844240 | 1.00[CEU][hapmap] |
| rs1968910 | 1.00[CHB][hapmap] |
| rs2046564 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs2931465 | 0.90[CHB][hapmap] |
| rs59834968 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs610276 | 1.00[CHB][hapmap] |
| rs657322 | 0.90[CHB][hapmap] |
| rs670617 | 1.00[CHB][hapmap] |
| rs7562323 | 1.00[CEU][hapmap] |
| rs7593072 | 0.80[CHB][hapmap] |
| rs7594736 | 0.91[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754266 | chr2:141023643-141270786 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv875185 | chr2:141055080-141179257 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv1002168 | chr2:141056296-141157971 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv459496 | chr2:141111125-141151319 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv583189 | chr2:141111125-141151319 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:141118400-141124200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
