Variant report

Variant	rs7562323
Chromosome Location	chr2:141284041-141284042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13398598	1.00[CEU][hapmap]
rs13414459	1.00[CEU][hapmap]
rs13414650	1.00[CEU][hapmap]
rs1352041	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1352042	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1352046	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs1385769	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs1385770	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs16843843	1.00[CEU][hapmap]
rs16843846	1.00[CEU][hapmap]
rs16844043	1.00[CEU][hapmap]
rs16844143	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs16844232	1.00[CEU][hapmap]
rs16844240	1.00[CEU][hapmap]
rs16844259	1.00[CEU][hapmap]
rs4508541	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
2	nsv433205	chr2:141270270-141285694	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141283400-141284600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:141283800-141284200	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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