Variant report
| Variant | rs1352046 |
|---|---|
| Chromosome Location | chr2:141285404-141285405 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs13000194 | 0.94[CEU][hapmap] |
| rs13032617 | 0.84[MEX][hapmap] |
| rs1352041 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1352042 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1385769 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap] |
| rs1385770 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap] |
| rs16844143 | 0.82[JPT][hapmap] |
| rs4508541 | 0.85[ASN][1000 genomes] |
| rs6430903 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6715219 | 0.95[CEU][hapmap];0.87[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap] |
| rs7562323 | 0.85[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7575460 | 0.95[CEU][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756334 | chr2:141166521-141285622 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| 2 | nsv433205 | chr2:141270270-141285694 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
