Variant report

Variant	rs6715219
Chromosome Location	chr2:141281486-141281487
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13000194	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs13032617	0.91[MEX][hapmap]
rs1352041	0.89[CEU][hapmap]
rs1352042	0.94[CEU][hapmap]
rs1352046	0.95[CEU][hapmap];0.87[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs1385769	0.95[CEU][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs1385770	0.95[CEU][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs1518440	0.83[MEX][hapmap]
rs17387292	0.83[MEX][hapmap]
rs17387536	0.83[MEX][hapmap]
rs35559425	0.80[AMR][1000 genomes]
rs6430903	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7422845	0.82[MEX][hapmap]
rs7575460	1.00[CEU][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
2	nsv459518	chr2:141218933-141282923	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
3	nsv583191	chr2:141218933-141282923	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv433205	chr2:141270270-141285694	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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