Variant report

Variant	rs17387536
Chromosome Location	chr2:141232182-141232183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11884294	0.90[ASN][1000 genomes]
rs11891221	0.82[ASN][1000 genomes]
rs11897270	1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs11899167	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899434	0.82[ASN][1000 genomes]
rs11903109	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11903329	0.90[ASN][1000 genomes]
rs12999683	0.82[ASN][1000 genomes]
rs13003817	0.82[ASN][1000 genomes]
rs13003819	0.82[ASN][1000 genomes]
rs13003828	1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs13023944	0.82[ASN][1000 genomes]
rs13030114	0.82[ASN][1000 genomes]
rs13032617	0.91[MEX][hapmap]
rs13422213	0.83[GIH][hapmap];0.84[MEX][hapmap]
rs1401114	0.82[ASN][1000 genomes]
rs1401115	0.82[ASN][1000 genomes]
rs1401117	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1518440	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs1518443	1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs1518444	1.00[CHD][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1518445	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1518446	0.82[ASN][1000 genomes]
rs1607387	0.94[CEU][hapmap]
rs17387292	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17387299	0.82[ASN][1000 genomes]
rs17478629	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1829364	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1878741	1.00[CHD][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1878742	0.82[ASN][1000 genomes]
rs41323147	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs41478345	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs4450541	0.80[GIH][hapmap];0.84[MEX][hapmap];0.90[ASN][1000 genomes]
rs4474828	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6430924	1.00[CHD][hapmap]
rs6715219	0.83[MEX][hapmap]
rs6747180	1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs72897813	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897827	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72897830	0.82[ASN][1000 genomes]
rs72898260	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72898263	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72898290	0.82[ASN][1000 genomes]
rs72899862	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899866	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899900	0.90[ASN][1000 genomes]
rs72901703	0.90[ASN][1000 genomes]
rs72901708	0.90[ASN][1000 genomes]
rs72901711	0.90[ASN][1000 genomes]
rs72901714	0.90[ASN][1000 genomes]
rs72901718	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72901723	0.90[ASN][1000 genomes]
rs72901724	0.90[ASN][1000 genomes]
rs72901730	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7422845	0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs7423992	0.90[ASN][1000 genomes]
rs7575460	0.83[MEX][hapmap]
rs7593984	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv875188	chr2:141207018-141253408	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv875189	chr2:141207018-141258419	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	nsv875190	chr2:141218933-141258419	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv875191	chr2:141218933-141268030	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv459518	chr2:141218933-141282923	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	nsv583191	chr2:141218933-141282923	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
10	nsv875192	chr2:141224542-141268030	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141230600-141232200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:141231000-141232200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:141231400-141232200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:141231400-141232400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:141231800-141232400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:141231800-141232400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:141232000-141232200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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