Variant report

Variant	rs41478345
Chromosome Location	chr2:141209476-141209477
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11884294	1.00[JPT][hapmap]
rs11891221	1.00[JPT][hapmap]
rs11897270	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11903329	1.00[JPT][hapmap]
rs12999683	1.00[JPT][hapmap]
rs13003828	1.00[CHD][hapmap]
rs13023944	1.00[JPT][hapmap]
rs13030114	1.00[JPT][hapmap]
rs13032617	0.84[MEX][hapmap]
rs13422213	0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap]
rs1401117	1.00[JPT][hapmap]
rs1518440	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs1518443	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1518444	1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap]
rs1518445	1.00[JPT][hapmap]
rs1518446	1.00[JPT][hapmap]
rs1607387	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17387292	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap]
rs17387299	1.00[JPT][hapmap]
rs17387536	0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs17478629	0.94[CEU][hapmap];1.00[JPT][hapmap]
rs1829364	0.83[CEU][hapmap]
rs1878741	1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1878742	1.00[JPT][hapmap]
rs41323147	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs4293513	1.00[JPT][hapmap]
rs4450541	0.80[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap]
rs6430924	1.00[CHD][hapmap]
rs6747180	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7422845	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7581949	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv875188	chr2:141207018-141253408	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv875189	chr2:141207018-141258419	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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