Variant report

Variant	rs13422213
Chromosome Location	chr2:141258419-141258420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11884294	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11891221	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11897270	0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs11899167	0.90[ASN][1000 genomes]
rs11899434	0.91[ASN][1000 genomes]
rs11903109	0.90[ASN][1000 genomes]
rs11903329	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12999683	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13003817	0.91[ASN][1000 genomes]
rs13003819	0.91[ASN][1000 genomes]
rs13003828	0.81[GIH][hapmap];0.86[MEX][hapmap];0.91[ASN][1000 genomes]
rs13023944	1.00[JPT][hapmap]
rs13030114	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1401114	0.91[ASN][1000 genomes]
rs1401115	0.91[ASN][1000 genomes]
rs1401117	0.81[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1518440	0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1518443	0.81[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[ASN][1000 genomes]
rs1518444	0.81[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[ASN][1000 genomes]
rs1518445	0.80[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1518446	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1607387	1.00[JPT][hapmap]
rs16843975	0.82[YRI][hapmap]
rs17387292	0.83[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[ASN][1000 genomes]
rs17387299	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17387536	0.83[GIH][hapmap];0.84[MEX][hapmap];0.90[ASN][1000 genomes]
rs17478629	1.00[JPT][hapmap]
rs1878741	0.81[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.90[TSI][hapmap];0.91[ASN][1000 genomes]
rs1878742	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs41323147	0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap]
rs41478345	0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap]
rs4293513	1.00[JPT][hapmap]
rs4450541	1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4474828	0.90[ASN][1000 genomes]
rs6744731	0.82[YRI][hapmap]
rs6747180	0.80[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[ASN][1000 genomes]
rs72897813	0.90[ASN][1000 genomes]
rs72897827	0.90[ASN][1000 genomes]
rs72897830	0.91[ASN][1000 genomes]
rs72899862	0.90[ASN][1000 genomes]
rs72899866	0.90[ASN][1000 genomes]
rs72899869	0.90[ASN][1000 genomes]
rs72899900	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901703	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901708	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901711	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901714	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901723	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901724	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72901730	0.90[ASN][1000 genomes]
rs7422845	0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap]
rs7423992	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581949	1.00[JPT][hapmap]
rs7597859	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv875189	chr2:141207018-141258419	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
4	nsv875190	chr2:141218933-141258419	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv875191	chr2:141218933-141268030	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv459518	chr2:141218933-141282923	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv583191	chr2:141218933-141282923	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv875192	chr2:141224542-141268030	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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