Variant report

Variant	rs1829364
Chromosome Location	chr2:141177427-141177428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10803583	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11899167	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11900092	0.95[ASN][1000 genomes]
rs11903109	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13018061	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1471887	0.89[JPT][hapmap]
rs1518439	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1518440	0.83[CEU][hapmap]
rs1607387	0.84[CEU][hapmap]
rs16843745	0.89[JPT][hapmap]
rs17387292	0.83[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17387536	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17470100	0.88[JPT][hapmap]
rs35546150	1.00[ASN][1000 genomes]
rs41323147	0.83[CEU][hapmap]
rs41478345	0.83[CEU][hapmap]
rs4474828	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4954836	0.95[ASN][1000 genomes]
rs59982045	1.00[ASN][1000 genomes]
rs72894082	1.00[ASN][1000 genomes]
rs72894090	0.91[ASN][1000 genomes]
rs72896235	1.00[ASN][1000 genomes]
rs72896239	1.00[ASN][1000 genomes]
rs72896256	1.00[ASN][1000 genomes]
rs72897813	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72897827	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72898260	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898263	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72899862	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72899866	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72899869	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72901718	0.82[EUR][1000 genomes]
rs72901730	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7422845	1.00[CEU][hapmap]
rs901524	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875185	chr2:141055080-141179257	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv875186	chr2:141123496-141217244	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141173800-141187600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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